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DESCRIPTION. HiLive is a read mapping tool that maps Illumina HiSeq (or comparable) reads to a reference genome right in the moment when they are produced. We present HiLive as a novel real time read mapper that implements a k-mer based alignment strategy. HiLive is a live-mapper, which means that it maps Illumina sequencing reads to target reference genomes while the sequencer is running. Therefore, we.
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Olly James. Thus, output can only be created for cycles for that keeping the temporary alignment files is activated. While read mapping algorithms have always been optimized for speed, they follow a sequential paradigm and only start after finishing of the sequencing run and conversion of files. Please include the file prefix when specifying the index location. Duplicate keys are not permitted.